PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_CA424FE08.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 291aa    MW: 32478.2 Da    PI: 9.4075
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_CA424FE08.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.22.7e-23140231191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                            +fY++YA++vGF vr  ++k    ++   +++f C keg+r e+      ++k+rr+ + tr+gC+a + v++e+dgk+++++l++ H
  Traes_5AL_CA424FE08.2 140 EFYKTYAHHVGFGVRLGQQKIV--DNVLLWKRFLCAKEGFRPEKGMVvvdHSKKRRKVKLTRCGCQAFIYVTRESDGKYKIASLSEYH 225
                            6****************99988..8889***************99888888999999******************************* PP

                   FAR1  86 nHelap 91 
                            nH+++p
  Traes_5AL_CA424FE08.2 226 NHPFVP 231
                            ***975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-20140231IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
EHSNANPNPQ RVAASSSLPT VXXXRCLAGR LRPVEFQIHP RPSSRRHSGC PGGPPLSEAE  60
TLCGQVLQVV ESANSVQNQD LSDATSFAEI NSPMLLIDDA STPKKKQAFS QEGSLYKPQC  120
DEELKPKVGM LFDDIGSVME FYKTYAHHVG FGVRLGQQKI VDNVLLWKRF LCAKEGFRPE  180
KGMVVVDHSK KRRKVKLTRC GCQAFIYVTR ESDGKYKIAS LSEYHNHPFV PPSHQHLIRS  240
NRQISERVKT TLHDCQKASI GTALAYRFLH VGAGGFQHVG CTQKDLQNHY G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700007.11e-59PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5F1D80.0W5F1D8_WHEAT; Uncharacterized protein
STRINGLOC_Os02g44790.12e-67(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-23FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]